Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036475.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036474.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036473.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036472.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036471.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036476.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036477.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8036478.1 | |
| CAI8036480.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036479.1 | |
| CAI8036481.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036482.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036486.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036487.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036483.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036484.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036485.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036488.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036490.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036489.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8036491.1 | |
| CAI8036492.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8036494.1 | RAB FAMILY |
| CAI8036493.1 | RAB FAMILY |
| CAI8036496.1 | RAB FAMILY |
| CAI8036495.1 | RAB FAMILY |
| CAI8036497.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8036498.1 | RAB FAMILY |
| CAI8036499.1 | |
| CAI8036500.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8036501.1 | |
| CAI8036502.1 | - |
| CAI8036503.1 | - |
| CAI8036504.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8036505.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8036506.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8036507.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8036508.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8036509.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8036510.1 | ALPHA-D-RIBOSE 1-METHYLPHOSPHONATE 5-TRIPHOSPHATE DIPHOSPHATASE |
| CAI8036511.1 | FLAVOREDOXIN-RELATED-RELATED |
| CAI8036512.1 | OBG GTPASE FAMILY |
| CAI8036513.1 | GNAT FAMILY N-ACETYLTRANSFERASE |
| CAI8036514.1 | EXSB FAMILY PROTEIN |
| CAI8036515.1 | NICKEL INSERTION PROTEIN-RELATED |
| CAI8036516.1 | NICKEL INSERTION PROTEIN-RELATED |
| CAI8036517.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8036518.1 | MOXR FAMILY PROTEIN |
| CAI8036519.1 | RECA |
| CAI8036520.1 | REGULATORY PROTEIN RECX FAMILY PROTEIN |
