Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036174.1 | STI2 PROTEIN-RELATED |
| CAI8036175.1 | STI2 PROTEIN-RELATED |
| CAI8036172.1 | STI2 PROTEIN-RELATED |
| CAI8036171.1 | STI2 PROTEIN-RELATED |
| CAI8036173.1 | STI2 PROTEIN-RELATED |
| CAI8036176.1 | STI2 PROTEIN-RELATED |
| CAI8036177.1 | STI2 PROTEIN-RELATED |
| CAI8036178.1 | STI2 PROTEIN-RELATED |
| CAI8036180.1 | WD REPEAT DOMAIN 60 |
| CAI8036181.1 | WD REPEAT DOMAIN 60 |
| CAI8036182.1 | WD REPEAT DOMAIN 60 |
| CAI8036179.1 | |
| CAI8036183.1 | ZINC FINGER PROTEIN 183 |
| CAI8036184.1 | |
| CAI8036185.1 | |
| CAI8036187.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8036186.1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| CAI8036188.1 | |
| CAI8036189.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8036190.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8036191.1 | PEROXISOMAL SARCOSINE OXIDASE |
| CAI8036196.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8036194.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8036193.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8036195.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8036192.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8036197.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8036198.1 | AMINOMETHYLTRANSFERASE |
| CAI8036199.1 | AMINOMETHYLTRANSFERASE |
| CAI8036201.1 | TRANSMEMBRANE PROTEIN 232 |
| CAI8036202.1 | TRANSMEMBRANE PROTEIN 232 |
| CAI8036203.1 | TRANSMEMBRANE PROTEIN 232 |
| CAI8036200.1 | |
| CAI8036204.1 | SAM (S-ADENOSYL METHIONINE) TRANSPORTER |
| CAI8036205.1 | FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED |
| CAI8036208.1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
| CAI8036207.1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
| CAI8036209.1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
| CAI8036206.1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
| CAI8036210.1 | AD-003 - RELATED |
| CAI8036211.1 | |
| CAI8036214.1 | ANKYRIN DOMAIN-CONTAINING |
| CAI8036213.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8036212.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8036215.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| CAI8036216.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8036221.1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| CAI8036222.1 | NF-KAPPA-B INHIBITOR ALPHA |
| CAI8036220.1 | MOLTING PROTEIN MLT-4 |
| CAI8036219.1 | ANKYRIN REPEAT PROTEIN |
