Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036071.1 | AMINOPEPTIDASE |
| CAI8036072.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8036074.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8036073.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8036075.1 | |
| CAI8036081.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036079.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036078.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036077.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036076.1 | |
| CAI8036082.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036080.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036083.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036084.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036085.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036086.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036087.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8036088.1 | ANKYRIN REPEAT CONTAINING |
| CAI8036089.1 | |
| CAI8036090.1 | MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS |
| CAI8036091.1 | |
| CAI8036093.1 | DUMPY: SHORTER THAN WILD-TYPE |
| CAI8036092.1 | |
| CAI8036094.1 | DUMPY: SHORTER THAN WILD-TYPE |
| CAI8036095.1 | DUMPY: SHORTER THAN WILD-TYPE |
| CAI8036099.1 | |
| CAI8036097.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036098.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036096.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036100.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036101.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036102.1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
| CAI8036103.1 | |
| CAI8036104.1 | |
| CAI8036105.1 | |
| CAI8036106.1 | - |
| CAI8036107.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| CAI8036108.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8036109.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8036110.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8036111.1 | |
| CAI8036112.1 | NHL REPEAT-CONTAINING PROTEIN 2 |
| CAI8036113.1 | |
| CAI8036114.1 | HEMK METHYLTRANSFERASE |
| CAI8036115.1 | LD18447P |
| CAI8036116.1 | FLAVIN PRENYLTRANSFERASE |
| CAI8036117.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8036118.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8036119.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8036120.1 | SEMAPHORIN |
