Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036121.1 | SEMAPHORIN |
| CAI8036122.1 | SEMAPHORIN |
| CAI8036123.1 | |
| CAI8036124.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8036125.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8036126.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8036129.1 | DNA PRIMASE SMALL SUBUNIT |
| CAI8036128.1 | DNA PRIMASE SMALL SUBUNIT |
| CAI8036127.1 | |
| CAI8036131.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8036130.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8036132.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8036133.1 | CELL DIVISION PROTEIN KINASE |
| CAI8036135.1 | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 |
| CAI8036134.1 | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 |
| CAI8036136.1 | CHONDROITIN SYNTHASE |
| CAI8036137.1 | 39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL |
| CAI8036138.1 | GH20023P |
| CAI8036139.1 | |
| CAI8036143.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| CAI8036142.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| CAI8036144.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| CAI8036141.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| CAI8036140.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| CAI8036145.1 | |
| CAI8036146.1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
| CAI8036147.1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
| CAI8036149.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8036148.1 | |
| CAI8036150.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8036151.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8036152.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8036154.1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
| CAI8036153.1 | |
| CAI8036158.1 | ENHANCER OF POLYCOMB |
| CAI8036157.1 | |
| CAI8036156.1 | ENHANCER OF POLYCOMB |
| CAI8036155.1 | ENHANCER OF POLYCOMB |
| CAI8036160.1 | TRAF3-INTERACTING PROTEIN 1 |
| CAI8036159.1 | TRAF3-INTERACTING PROTEIN 1 |
| CAI8036161.1 | |
| CAI8036162.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8036163.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8036164.1 | UNCHARACTERIZED |
| CAI8036165.1 | |
| CAI8036166.1 | |
| CAI8036169.1 | TRANSMEMBRANE PROTEIN |
| CAI8036168.1 | TRANSMEMBRANE PROTEIN |
| CAI8036167.1 | TRANSMEMBRANE PROTEIN |
| CAI8036170.1 | TRANSMEMBRANE PROTEIN |
