Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036021.1 | PROTEIN YAE1 HOMOLOG |
| CAI8036023.1 | |
| CAI8036022.1 | |
| CAI8036024.1 | BILIVERDIN REDUCTASE A |
| CAI8036025.1 | |
| CAI8036026.1 | |
| CAI8036027.1 | |
| CAI8036028.1 | |
| CAI8036029.1 | OXIDOREDUCTASE, IRON-SULPHUR BINDING SUBUNIT-RELATED-RELATED |
| CAI8036030.1 | GEO12009P1 |
| CAI8036031.1 | GEO12009P1 |
| CAI8036032.1 | GEO12009P1 |
| CAI8036033.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8036034.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8036035.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8036036.1 | ACETYLORNITHINE DEACETYLASE |
| CAI8036037.1 | |
| CAI8036038.1 | LIPOPROTEIN SIGNAL PEPTIDASE |
| CAI8036039.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8036040.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8036041.1 | |
| CAI8036044.1 | |
| CAI8036043.1 | |
| CAI8036042.1 | |
| CAI8036046.1 | |
| CAI8036045.1 | |
| CAI8036047.1 | |
| CAI8036048.1 | |
| CAI8036049.1 | |
| CAI8036050.1 | |
| CAI8036052.1 | |
| CAI8036051.1 | |
| CAI8036053.1 | |
| CAI8036054.1 | ACYL-ACTIVATING ENZYME |
| CAI8036055.1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
| CAI8036056.1 | ALCOHOL DEHYDROGENASE 1-RELATED |
| CAI8036057.1 | TWO-COMPONENT HISTIDINE KINASE |
| CAI8036058.1 | CRP FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8036059.1 | RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED |
| CAI8036060.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8036061.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8036062.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8036063.1 | BETA-HEXOSAMINIDASE-RELATED |
| CAI8036064.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8036065.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI8036067.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8036066.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8036068.1 | SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN |
| CAI8036069.1 | AMINOPEPTIDASE |
| CAI8036070.1 |
