Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035721.1 | UNNAMED PRODUCT-RELATED |
| CAI8035722.1 | N-ACETYLMURAMOYL-L-ALANINE AMIDASE |
| CAI8035723.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8035724.1 | VALYL-TRNA SYNTHETASES |
| CAI8035725.1 | VALYL-TRNA SYNTHETASES |
| CAI8035726.1 | EXPRESSED PROTEIN |
| CAI8035727.1 | LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED |
| CAI8035728.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8035729.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8035730.1 | BETA-LACTAMASE |
| CAI8035731.1 | |
| CAI8035732.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8035733.1 | AMINOTRANSFERASE |
| CAI8035734.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8035735.1 | OXALATE-BINDING PROTEIN |
| CAI8035736.1 | MERCURIC REDUCTASE |
| CAI8035737.1 | |
| CAI8035738.1 | FO SYNTHASE (COFH) |
| CAI8035739.1 | OXIDOREDUCTASE-RELATED |
| CAI8035740.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8035741.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8035742.1 | |
| CAI8035743.1 | PROTEIN SMF |
| CAI8035744.1 | |
| CAI8035745.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8035746.1 | 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC |
| CAI8035747.1 | |
| CAI8035748.1 | DNA REPAIR PROTEIN RADA |
| CAI8035749.1 | PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC |
| CAI8035750.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC |
| CAI8035751.1 | HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPE |
| CAI8035752.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER |
| CAI8035753.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8035754.1 | DNA POLYMERASE III SUBUNIT BETA |
| CAI8035755.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8035756.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035763.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035760.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035764.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035762.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035761.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035758.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035759.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035757.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035766.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035769.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035765.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035768.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035767.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8035770.1 | H2HPP ISOMERASE |
