Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035471.1 | |
| CAI8035472.1 | KYNURENINE 3-MONOOXYGENASE |
| CAI8035473.1 | DOLICHYL GLYCOSYLTRANSFERASE |
| CAI8035474.1 | DOLICHYL GLYCOSYLTRANSFERASE |
| CAI8035477.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |
| CAI8035475.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |
| CAI8035476.1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |
| CAI8035480.1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8035479.1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8035478.1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8035481.1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8035482.1 | UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1 |
| CAI8035487.1 | CYCLINS |
| CAI8035486.1 | CYCLINS |
| CAI8035485.1 | CYCLINS |
| CAI8035484.1 | CYCLINS |
| CAI8035483.1 | |
| CAI8035488.1 | |
| CAI8035492.1 | |
| CAI8035491.1 | |
| CAI8035493.1 | |
| CAI8035490.1 | |
| CAI8035489.1 | |
| CAI8035494.1 | |
| CAI8035495.1 | |
| CAI8035500.1 | UNCHARACTERIZED |
| CAI8035499.1 | UNCHARACTERIZED |
| CAI8035498.1 | UNCHARACTERIZED |
| CAI8035497.1 | UNCHARACTERIZED |
| CAI8035496.1 | UNCHARACTERIZED |
| CAI8035501.1 | |
| CAI8035502.1 | |
| CAI8035503.1 | |
| CAI8035504.1 | |
| CAI8035506.1 | |
| CAI8035505.1 | |
| CAI8035508.1 | |
| CAI8035507.1 | |
| CAI8035509.1 | |
| CAI8035512.1 | |
| CAI8035511.1 | |
| CAI8035510.1 | |
| CAI8035514.1 | |
| CAI8035515.1 | |
| CAI8035513.1 | |
| CAI8035516.1 | |
| CAI8035517.1 | |
| CAI8035518.1 | |
| CAI8035519.1 | |
| CAI8035520.1 |
