Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035371.1 | |
| CAI8035373.1 | MOLTING PROTEIN MLT-4 |
| CAI8035374.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8035372.1 | |
| CAI8035375.1 | |
| CAI8035377.1 | |
| CAI8035376.1 | |
| CAI8035378.1 | |
| CAI8035379.1 | |
| CAI8035381.1 | |
| CAI8035380.1 | |
| CAI8035382.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8035383.1 | |
| CAI8035384.1 | |
| CAI8035386.1 | |
| CAI8035385.1 | |
| CAI8035395.1 | LEPRECAN 1 |
| CAI8035394.1 | LEPRECAN 1 |
| CAI8035393.1 | LEPRECAN 1 |
| CAI8035392.1 | LEPRECAN 1 |
| CAI8035391.1 | LEPRECAN 1 |
| CAI8035390.1 | LEPRECAN 1 |
| CAI8035389.1 | LEPRECAN 1 |
| CAI8035388.1 | LEPRECAN 1 |
| CAI8035387.1 | LEPRECAN 1 |
| CAI8035397.1 | |
| CAI8035396.1 | |
| CAI8035398.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8035399.1 | |
| CAI8035400.1 | |
| CAI8035401.1 | |
| CAI8035402.1 | |
| CAI8035403.1 | |
| CAI8035404.1 | |
| CAI8035405.1 | |
| CAI8035406.1 | |
| CAI8035407.1 | |
| CAI8035408.1 | |
| CAI8035409.1 | |
| CAI8035410.1 | |
| CAI8035411.1 | GABA-B RECEPTOR |
| CAI8035412.1 | GABA-B RECEPTOR |
| CAI8035413.1 | GABA-B RECEPTOR |
| CAI8035414.1 | |
| CAI8035417.1 | |
| CAI8035416.1 | |
| CAI8035418.1 | |
| CAI8035419.1 | |
| CAI8035415.1 | |
| CAI8035423.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
