About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8012572.11-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
CAI8012571.11-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
CAI8012570.11-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
CAI8012574.1DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
CAI8012575.1RIBOSOME RECYCLING FACTOR
CAI8012576.1URIDYLATE KINASE
CAI8012578.130S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR
CAI8012577.130S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR
CAI8012579.1FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED
CAI8012580.1PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED
CAI8012581.1DEHYDROGENASES, SHORT CHAIN
CAI8012582.1-
CAI8012583.1UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER
CAI8012584.1OLIGOPEPTIDE/DIPEPTIDE ABC TRANSPORTER, ATPASE SUBUNIT
CAI8012585.1ABC-TYPE DIPEPTIDE/OLIGOPEPTIDE TRANSPORT SYSTEM, ATPASE COMPONENT
CAI8012586.1-
CAI8012589.1URIDINE KINASE
CAI8012588.1URIDINE KINASE
CAI8012587.13'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN
CAI8012590.1URIDINE KINASE
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