Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035171.1 | ATROPHIN-RELATED |
| CAI8035172.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8035173.1 | RNA METHYLASE-RELATED |
| CAI8035174.1 | NADPH NITROREDUCTASE |
| CAI8035175.1 | PROTEIN TOLB HOMOLOG |
| CAI8035176.1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| CAI8035177.1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| CAI8035178.1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
| CAI8035180.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| CAI8035181.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| CAI8035179.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| CAI8035182.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| CAI8035184.1 | |
| CAI8035185.1 | |
| CAI8035183.1 | |
| CAI8035187.1 | |
| CAI8035186.1 | |
| CAI8035188.1 | IMPORTIN ALPHA |
| CAI8035189.1 | IMPORTIN ALPHA |
| CAI8035190.1 | IMPORTIN ALPHA |
| CAI8035191.1 | |
| CAI8035193.1 | |
| CAI8035192.1 | |
| CAI8035194.1 | |
| CAI8035197.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8035196.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8035195.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8035198.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8035199.1 | |
| CAI8035200.1 | |
| CAI8035201.1 | UNCHARACTERIZED |
| CAI8035202.1 | UNCHARACTERIZED |
| CAI8035206.1 | ETS |
| CAI8035205.1 | ETS |
| CAI8035204.1 | ETS |
| CAI8035203.1 | ETS |
| CAI8035207.1 | GPI MANNOSYLTRANSFERASE 2 |
| CAI8035214.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035211.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035210.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035212.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035213.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035209.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035208.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035215.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035216.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035217.1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
| CAI8035219.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8035218.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8035220.1 |
