Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034870.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8034872.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8034873.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8034874.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8034875.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8034876.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI8034877.1 | |
| CAI8034878.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI8034880.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI8034879.1 | |
| CAI8034881.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI8034882.1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F |
| CAI8034883.1 | |
| CAI8034884.1 | |
| CAI8034886.1 | AUGMIN SUBUNIT 4 FAMILY MEMBER |
| CAI8034885.1 | AUGMIN SUBUNIT 4 FAMILY MEMBER |
| CAI8034889.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034888.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034887.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034892.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034891.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034890.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034893.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034894.1 | |
| CAI8034897.1 | CENTROMERE PROTEIN N |
| CAI8034896.1 | |
| CAI8034895.1 | |
| CAI8034899.1 | RIBOSOME RECYCLING FACTOR |
| CAI8034898.1 | RIBOSOME RECYCLING FACTOR |
| CAI8034900.1 | RIBOSOME RECYCLING FACTOR |
| CAI8034901.1 | TRANSMEMBRANE PROTEIN 189 |
| CAI8034902.1 | FORKHEAD BOX PROTEIN |
| CAI8034903.1 | FORKHEAD BOX PROTEIN |
| CAI8034904.1 | |
| CAI8034905.1 | |
| CAI8034906.1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
| CAI8034907.1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
| CAI8034908.1 | RIBONUCLEOPROTEIN RB97D |
| CAI8034910.1 | |
| CAI8034909.1 | PROTEASOME ASSEMBLY CHAPERONE 3 |
| CAI8034911.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8034912.1 | UNCHARACTERIZED |
| CAI8034915.1 | CADHERIN-87A |
| CAI8034914.1 | CADHERIN-23 |
| CAI8034913.1 | CADHERIN-23 |
| CAI8034916.1 | CADHERIN-23 |
| CAI8034917.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8034920.1 | 5'-NUCLEOTIDASE-RELATED |
| CAI8034919.1 | 5'-NUCLEOTIDASE-RELATED |
| CAI8034918.1 | 5'-NUCLEOTIDASE-RELATED |
