Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034969.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034972.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034973.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034974.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034975.1 | |
| CAI8034982.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034980.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034978.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034979.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034981.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034977.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034976.1 | MUCIN 4-RELATED |
| CAI8034983.1 | |
| CAI8034986.1 | MUCIN 4-RELATED |
| CAI8034985.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034984.1 | MUCIN 4-RELATED |
| CAI8034987.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8034988.1 | |
| CAI8034989.1 | BLL0828 PROTEIN |
| CAI8034990.1 | GLUTAMINE SYNTHETASE |
| CAI8034991.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8034992.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8034993.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8034994.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8034995.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8034997.1 | ADENINE DNA GLYCOSYLASE |
| CAI8034996.1 | ADENINE DNA GLYCOSYLASE |
| CAI8034998.1 | |
| CAI8034999.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8035000.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8035001.1 | CHLORIDE CHANNEL PROTEIN CLC-E |
| CAI8035002.1 | RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE |
| CAI8035003.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035004.1 | LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC |
| CAI8035005.1 | 50S RIBOSOMAL PROTEIN L32 |
| CAI8035006.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI8035007.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8035008.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8035009.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8035010.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8035011.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8035012.1 | ACYL CARRIER PROTEIN |
| CAI8035013.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8035014.1 | RIBONUCLEASE III |
| CAI8035015.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8035016.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8035017.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035018.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035019.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035020.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
