Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034721.1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| CAI8034722.1 | |
| CAI8034728.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034724.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034725.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034726.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034727.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034723.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034729.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034730.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034731.1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| CAI8034732.1 | |
| CAI8034733.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8034734.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8034736.1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
| CAI8034735.1 | |
| CAI8034737.1 | EXPRESSED PROTEIN |
| CAI8034739.1 | |
| CAI8034738.1 | |
| CAI8034740.1 | |
| CAI8034741.1 | INOSITOL MONOPHOSPHATASE |
| CAI8034742.1 | ATP-DEPENDENT PROTEASE |
| CAI8034743.1 | ATP-DEPENDENT PROTEASE |
| CAI8034744.1 | ATP-DEPENDENT PROTEASE |
| CAI8034746.1 | PEFLIN |
| CAI8034745.1 | PEFLIN |
| CAI8034749.1 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
| CAI8034748.1 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
| CAI8034747.1 | PROGRAMMED CELL DEATH PROTEIN 5 |
| CAI8034750.1 | BONUS, ISOFORM C-RELATED |
| CAI8034751.1 | AMINO ACID TRANSPORTER |
| CAI8034752.1 | DOCKING PROTEIN RELATED |
| CAI8034753.1 | TAL1 SCL INTERRUPTING LOCUS |
| CAI8034754.1 | TAL1 SCL INTERRUPTING LOCUS |
| CAI8034756.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8034755.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8034759.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034757.1 | TRNA THREONYLCARBAMOYLADENOSINE DEHYDRATASE |
| CAI8034758.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034760.1 | |
| CAI8034761.1 | DNA-BINDING PROTEIN HU |
| CAI8034762.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8034763.1 | REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR |
| CAI8034764.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8034765.1 | DIADENYLATE CYCLASE |
| CAI8034766.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8034767.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8034768.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8034769.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI8034770.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
