Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034470.1 | PKSB |
| CAI8034472.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8034473.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8034474.1 | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER |
| CAI8034475.1 | UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE |
| CAI8034476.1 | UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE |
| CAI8034477.1 | BCDNA.GH03377 |
| CAI8034478.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8034482.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8034481.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8034480.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8034479.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8034483.1 | - |
| CAI8034484.1 | UNCHARACTERIZED |
| CAI8034485.1 | XANTHINE DEHYDROGENASE |
| CAI8034486.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8034487.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8034488.1 | PHOSPHOGLYCOLATE PHOSPHATASE |
| CAI8034492.1 | |
| CAI8034491.1 | |
| CAI8034490.1 | |
| CAI8034489.1 | |
| CAI8034493.1 | |
| CAI8034494.1 | |
| CAI8034496.1 | |
| CAI8034495.1 | |
| CAI8034497.1 | LEPRECAN 1 |
| CAI8034498.1 | LEPRECAN 1 |
| CAI8034501.1 | LEPRECAN 1 |
| CAI8034500.1 | LEPRECAN 1 |
| CAI8034499.1 | LEPRECAN 1 |
| CAI8034502.1 | LEPRECAN 1 |
| CAI8034503.1 | LEPRECAN 1 |
| CAI8034504.1 | LEPRECAN 1 |
| CAI8034505.1 | |
| CAI8034506.1 | |
| CAI8034508.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8034507.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8034510.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8034511.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8034512.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8034509.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8034513.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8034515.1 | |
| CAI8034514.1 | |
| CAI8034516.1 | |
| CAI8034517.1 | GABA-B RECEPTOR |
| CAI8034518.1 | |
| CAI8034519.1 | |
| CAI8034520.1 |
