Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034370.1 | LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8034368.1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
| CAI8034373.1 | LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8034375.1 | |
| CAI8034374.1 | |
| CAI8034376.1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 |
| CAI8034377.1 | |
| CAI8034378.1 | |
| CAI8034379.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8034380.1 | CGI-41 METHYLTRANSFERASE |
| CAI8034381.1 | CGI-41 METHYLTRANSFERASE |
| CAI8034382.1 | |
| CAI8034383.1 | |
| CAI8034384.1 | CGI-41 METHYLTRANSFERASE |
| CAI8034385.1 | CGI-41 METHYLTRANSFERASE |
| CAI8034387.1 | TALIN |
| CAI8034386.1 | TALIN |
| CAI8034388.1 | TALIN |
| CAI8034389.1 | |
| CAI8034390.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8034391.1 | BCDNA.GH03377 |
| CAI8034392.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8034393.1 | |
| CAI8034395.1 | |
| CAI8034394.1 | |
| CAI8034398.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8034397.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8034396.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8034400.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8034399.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8034402.1 | SACSIN |
| CAI8034401.1 | SACSIN |
| CAI8034403.1 | SACSIN |
| CAI8034404.1 | SACSIN |
| CAI8034405.1 | |
| CAI8034407.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034408.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034406.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034409.1 | MUCIN 4-RELATED |
| CAI8034410.1 | MUCIN 4-RELATED |
| CAI8034411.1 | ENOS INTERACTING PROTEIN |
| CAI8034412.1 | MUCIN 4-RELATED |
| CAI8034416.1 | KINESIN-LIKE PROTEIN KLP-3 |
| CAI8034417.1 | KINESIN-LIKE PROTEIN KLP-3 |
| CAI8034418.1 | KINESIN-LIKE PROTEIN KLP-3 |
| CAI8034414.1 | KINESIN-LIKE PROTEIN KLP-3 |
| CAI8034413.1 | |
| CAI8034415.1 | KINESIN-LIKE PROTEIN KLP-3 |
| CAI8034419.1 | |
| CAI8034420.1 | SERYL-TRNA SYNTHETASE |
