Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034121.1 | AT29763P-RELATED |
| CAI8034122.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8034123.1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED |
| CAI8034124.1 | |
| CAI8034125.1 | |
| CAI8034127.1 | |
| CAI8034126.1 | |
| CAI8034128.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8034129.1 | SIKE FAMILY MEMBER |
| CAI8034130.1 | |
| CAI8034131.1 | |
| CAI8034132.1 | |
| CAI8034133.1 | |
| CAI8034134.1 | SNARE PROTEINS |
| CAI8034136.1 | RIBOSOMAL PROTEIN S15P/S13E |
| CAI8034135.1 | RIBOSOMAL PROTEIN S15P/S13E |
| CAI8034137.1 | |
| CAI8034138.1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 2 |
| CAI8034139.1 | |
| CAI8034141.1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 2 |
| CAI8034140.1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 2 |
| CAI8034148.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034146.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034145.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034144.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034147.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034143.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034142.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034149.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034151.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034150.1 | N-ACETYLTRANSFERASE 10 |
| CAI8034154.1 | KINASE D-INTERACTING SUBSTRATE OF 220 KDA |
| CAI8034152.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8034155.1 | POTE ANKYRIN DOMAIN |
| CAI8034153.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8034156.1 | |
| CAI8034157.1 | |
| CAI8034158.1 | |
| CAI8034159.1 | |
| CAI8034160.1 | DYNACTIN SUBUNIT P25 |
| CAI8034161.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8034162.1 | PROBABLE 2-DEHYDROPANTOATE 2-REDUCTASE |
| CAI8034163.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8034164.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8034165.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8034166.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8034167.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8034168.1 | CYCLASE-LIKE PROTEIN 2 |
| CAI8034172.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034170.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
