Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033872.1 | WD REPEAT CONTAINING PROTEIN |
| CAI8033871.1 | WD REPEAT CONTAINING PROTEIN |
| CAI8033873.1 | WD REPEAT CONTAINING PROTEIN |
| CAI8033874.1 | |
| CAI8033875.1 | |
| CAI8033876.1 | |
| CAI8033879.1 | NARDILYSIN |
| CAI8033878.1 | NARDILYSIN |
| CAI8033877.1 | NARDILYSIN |
| CAI8033880.1 | NARDILYSIN |
| CAI8033881.1 | NARDILYSIN |
| CAI8033884.1 | ZINC/IRON TRANSPORTER |
| CAI8033883.1 | |
| CAI8033882.1 | |
| CAI8033885.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG |
| CAI8033886.1 | BIOTIN PROTEIN LIGASE |
| CAI8033887.1 | |
| CAI8033888.1 | |
| CAI8033889.1 | |
| CAI8033891.1 | |
| CAI8033890.1 | |
| CAI8033892.1 | |
| CAI8033893.1 | |
| CAI8033894.1 | |
| CAI8033895.1 | |
| CAI8033896.1 | |
| CAI8033897.1 | |
| CAI8033898.1 | |
| CAI8033899.1 | |
| CAI8033900.1 | |
| CAI8033901.1 | |
| CAI8033906.1 | UNCHARACTERIZED |
| CAI8033905.1 | UNCHARACTERIZED |
| CAI8033904.1 | UNCHARACTERIZED |
| CAI8033903.1 | UNCHARACTERIZED |
| CAI8033902.1 | UNCHARACTERIZED |
| CAI8033907.1 | UNCHARACTERIZED |
| CAI8033909.1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
| CAI8033910.1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
| CAI8033908.1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
| CAI8033911.1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
| CAI8033913.1 | STYLE CELL-CYCLE INHIBITOR 1 |
| CAI8033912.1 | STYLE CELL-CYCLE INHIBITOR 1 |
| CAI8033915.1 | STYLE CELL-CYCLE INHIBITOR 1 |
| CAI8033914.1 | STYLE CELL-CYCLE INHIBITOR 1 |
| CAI8033916.1 | STYLE CELL-CYCLE INHIBITOR 1 |
| CAI8033917.1 | UNCHARACTERIZED |
| CAI8033921.1 | |
| CAI8033922.1 | |
| CAI8033920.1 |
