Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033671.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8033670.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8033673.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8033674.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8033675.1 | |
| CAI8033676.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8033677.1 | - |
| CAI8033678.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8033679.1 | |
| CAI8033680.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8033681.1 | |
| CAI8033682.1 | |
| CAI8033683.1 | |
| CAI8033684.1 | |
| CAI8033685.1 | |
| CAI8033686.1 | SULFATASE MODIFYING FACTOR 1, 2 |
| CAI8033687.1 | |
| CAI8033688.1 | WD40 REPEAT PROTEIN |
| CAI8033689.1 | |
| CAI8033690.1 | TRANSAMINASE |
| CAI8033691.1 | IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED |
| CAI8033692.1 | METHIONINE SYNTHASE |
| CAI8033693.1 | |
| CAI8033694.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033696.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033695.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033697.1 | |
| CAI8033700.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033698.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033699.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033701.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033702.1 | |
| CAI8033705.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033703.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033706.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033704.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033707.1 | |
| CAI8033708.1 | |
| CAI8033709.1 | |
| CAI8033710.1 | |
| CAI8033711.1 | |
| CAI8033713.1 | |
| CAI8033712.1 | |
| CAI8033715.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033714.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033716.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8033718.1 | |
| CAI8033719.1 | |
| CAI8033717.1 | |
| CAI8033720.1 |
