Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033521.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8033522.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8033523.1 | |
| CAI8033524.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8033525.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8033526.1 | 5-OXOPROLINASE RELATED |
| CAI8033527.1 | BILIVERDIN REDUCTASE A |
| CAI8033529.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033531.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033528.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033530.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033532.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033534.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033533.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8033535.1 | |
| CAI8033536.1 | MUR LIGASE FAMILY MEMBER |
| CAI8033537.1 | MONOACYLGLYCEROL LIPASE |
| CAI8033540.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033543.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033542.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033539.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033538.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033541.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033544.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI8033545.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI8033546.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8033547.1 | SLL1084 PROTEIN |
| CAI8033548.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8033549.1 | ANKYRIN REPEAT PROTEIN |
| CAI8033550.1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| CAI8033551.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033552.1 | SUA5 |
| CAI8033553.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| CAI8033554.1 | |
| CAI8033555.1 | |
| CAI8033556.1 | NEURALIZED |
| CAI8033557.1 | NEURALIZED |
| CAI8033558.1 | |
| CAI8033559.1 | |
| CAI8033560.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| CAI8033561.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8033562.1 | |
| CAI8033563.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8033564.1 | |
| CAI8033565.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8033566.1 | |
| CAI8033567.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8033568.1 | |
| CAI8033569.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8033570.1 | PEPTIDASE T |
