Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033221.1 | |
| CAI8033222.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8033223.1 | PROTEIN NRFC |
| CAI8033224.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8033225.1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8033226.1 | |
| CAI8033227.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI8033228.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8033229.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8033230.1 | |
| CAI8033231.1 | CHROMATE REDUCTASE |
| CAI8033232.1 | BIFUNCTIONAL PROTEIN PYRR |
| CAI8033233.1 | ALLANTOINASE |
| CAI8033234.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8033235.1 | |
| CAI8033236.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8033237.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8033238.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8033239.1 | |
| CAI8033240.1 | LIPOPROTEIN-RELATED |
| CAI8033241.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8033242.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8033243.1 | SUGAR FERMENTATION STIMULATION PROTEIN A |
| CAI8033244.1 | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III |
| CAI8033245.1 | |
| CAI8033246.1 | |
| CAI8033247.1 | TETRATRICOPEPTIDE-LIKE HELICAL |
| CAI8033249.1 | UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN |
| CAI8033248.1 | |
| CAI8033250.1 | ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 |
| CAI8033251.1 | NAD DEPENDENT EPIMERASE/DEHYDRATASE |
| CAI8033252.1 | |
| CAI8033253.1 | |
| CAI8033254.1 | PROTEIN SIDEKICK |
| CAI8033255.1 | PROTEIN SIDEKICK |
| CAI8033256.1 | PROTEIN SIDEKICK |
| CAI8033257.1 | |
| CAI8033258.1 | INTRACELLULAR TRAFFIC PROTEIN-RELATED |
| CAI8033259.1 | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED |
| CAI8033260.1 | |
| CAI8033261.1 | |
| CAI8033268.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033271.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033272.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033270.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033269.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033273.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033267.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033265.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033266.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
