Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033264.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033263.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033262.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8033274.1 | |
| CAI8033275.1 | |
| CAI8033276.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8033277.1 | SYNEMBRYN |
| CAI8033278.1 | SYNEMBRYN |
| CAI8033279.1 | |
| CAI8033280.1 | ANTITOXIN HICB |
| CAI8033281.1 | ANTITOXIN HIGA-1 |
| CAI8033282.1 | |
| CAI8033283.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8033284.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8033285.1 | MOXR FAMILY PROTEIN |
| CAI8033286.1 | MOXR FAMILY PROTEIN |
| CAI8033287.1 | |
| CAI8033288.1 | BETA-HEXOSAMINIDASE |
| CAI8033289.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8033290.1 | |
| CAI8033291.1 | MUCIN 4-RELATED |
| CAI8033292.1 | MUCIN 4-RELATED |
| CAI8033293.1 | |
| CAI8033294.1 | |
| CAI8033295.1 | UBIQUITIN |
| CAI8033298.1 | ALTERNATIVE OXIDASE |
| CAI8033297.1 | ALTERNATIVE OXIDASE |
| CAI8033296.1 | ALTERNATIVE OXIDASE |
| CAI8033299.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8033300.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8033301.1 | |
| CAI8033302.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8033303.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8033304.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8033305.1 | |
| CAI8033306.1 | KINASE-RELATED |
| CAI8033307.1 | |
| CAI8033308.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8033309.1 | 6-PHOSPHOGLUCONOLACTONASE-RELATED |
| CAI8033310.1 | BLR3401 PROTEIN |
| CAI8033311.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8033312.1 | METHIONINE SYNTHASE |
| CAI8033313.1 | FERREDOXIN-RELATED |
| CAI8033314.1 | AMIDOHYDROLASE |
| CAI8033315.1 | OXIDOREDUCTASE-RELATED |
| CAI8033316.1 | BLR8190 PROTEIN |
| CAI8033317.1 | |
| CAI8033318.1 | |
| CAI8033319.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI8033320.1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL |
