Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033171.1 | BNAUNNG04460D PROTEIN-RELATED |
| CAI8033172.1 | |
| CAI8033173.1 | VACUOLAR ATP SYNTHASE SUBUNIT H |
| CAI8033179.1 | |
| CAI8033178.1 | |
| CAI8033177.1 | ANCIENT UBIQUITOUS PROTEIN |
| CAI8033176.1 | ANCIENT UBIQUITOUS PROTEIN |
| CAI8033175.1 | ANCIENT UBIQUITOUS PROTEIN |
| CAI8033174.1 | ANCIENT UBIQUITOUS PROTEIN |
| CAI8033180.1 | |
| CAI8033183.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033184.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033182.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033181.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033185.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033187.1 | PANTOTHENATE KINASE |
| CAI8033186.1 | PANTOTHENATE KINASE |
| CAI8033188.1 | BNIP1-RELATED |
| CAI8033189.1 | |
| CAI8033191.1 | PHOSPHOACETYLGLUCOSAMINE MUTASE |
| CAI8033192.1 | PHOSPHOACETYLGLUCOSAMINE MUTASE |
| CAI8033193.1 | PHOSPHOACETYLGLUCOSAMINE MUTASE |
| CAI8033190.1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| CAI8033195.1 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
| CAI8033194.1 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
| CAI8033196.1 | B-CELL TRANSLOCATION GENE |
| CAI8033197.1 | |
| CAI8033198.1 | PHOSPHATASE, PUTATIVE-RELATED |
| CAI8033199.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| CAI8033200.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| CAI8033201.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| CAI8033202.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| CAI8033203.1 | |
| CAI8033204.1 | |
| CAI8033205.1 | |
| CAI8033206.1 | |
| CAI8033208.1 | |
| CAI8033207.1 | |
| CAI8033212.1 | |
| CAI8033210.1 | |
| CAI8033211.1 | |
| CAI8033209.1 | |
| CAI8033213.1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| CAI8033215.1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| CAI8033214.1 | |
| CAI8033216.1 | |
| CAI8033217.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8033218.1 | BONUS, ISOFORM C-RELATED |
| CAI8033219.1 | |
| CAI8033220.1 |
