Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032870.1 | NUCLEAR RECEPTOR COACTIVATOR 5-RELATED |
| CAI8032872.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI8032874.1 | NUCLEAR RECEPTOR COACTIVATOR 5-RELATED |
| CAI8032875.1 | OXA1 |
| CAI8032873.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 |
| CAI8032877.1 | |
| CAI8032876.1 | |
| CAI8032878.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 6 |
| CAI8032881.1 | UNCHARACTERIZED |
| CAI8032880.1 | UNCHARACTERIZED |
| CAI8032879.1 | UNCHARACTERIZED |
| CAI8032882.1 | UNCHARACTERIZED |
| CAI8032883.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI8032884.1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
| CAI8032886.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8032885.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8032887.1 | THIAMINE-TRIPHOSPHATASE |
| CAI8032888.1 | THIAMINE-TRIPHOSPHATASE |
| CAI8032889.1 | DNA TOPOISOMERASE I |
| CAI8032891.1 | DNA TOPOISOMERASE I |
| CAI8032890.1 | DNA TOPOISOMERASE I |
| CAI8032892.1 | DNA TOPOISOMERASE I |
| CAI8032893.1 | PKSB |
| CAI8032894.1 | PIG-M MANNOSYLTRANSFERASE |
| CAI8032896.1 | 37S RIBOSOMAL PROTEIN S22 |
| CAI8032895.1 | 37S RIBOSOMAL PROTEIN S22 |
| CAI8032897.1 | DIPHOSPHOMEVALONATE DECARBOXYLASE |
| CAI8032898.1 | DYNEIN LIGHT INTERMEDIATE CHAIN |
| CAI8032900.1 | DYNEIN LIGHT INTERMEDIATE CHAIN |
| CAI8032899.1 | DYNEIN LIGHT INTERMEDIATE CHAIN |
| CAI8032901.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| CAI8032903.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
| CAI8032902.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
| CAI8032905.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8032904.1 | |
| CAI8032909.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032908.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032907.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032906.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032910.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032911.1 | MTG8 ETO EIGHT TWENTY ONE PROTEIN |
| CAI8032912.1 | |
| CAI8032916.1 | ABC TRANSPORTER B FAMILY |
| CAI8032915.1 | ABC TRANSPORTER B FAMILY |
| CAI8032914.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8032913.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8032917.1 | ABC TRANSPORTER B FAMILY |
| CAI8032918.1 | ABC TRANSPORTER B FAMILY |
| CAI8032919.1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL |
| CAI8032920.1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
