Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032921.1 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
| CAI8032922.1 | |
| CAI8032924.1 | AMINO ACID TRANSPORTER |
| CAI8032923.1 | |
| CAI8032926.1 | SYNTAXIN |
| CAI8032925.1 | |
| CAI8032927.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032930.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032931.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032929.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032928.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032932.1 | INTEGRATOR COMPLEX SUBUNIT 2 |
| CAI8032933.1 | ROTATIN |
| CAI8032934.1 | |
| CAI8032935.1 | |
| CAI8032936.1 | |
| CAI8032937.1 | AMINOTRANSFERASE |
| CAI8032938.1 | RIBD C-TERMINAL DOMAIN CONTAINING PROTEIN |
| CAI8032939.1 | CHORISMATE MUTASE |
| CAI8032940.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8032941.1 | |
| CAI8032942.1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
| CAI8032943.1 | GLYCOSYL TRANSFERASE |
| CAI8032944.1 | ASPARTATE KINASE |
| CAI8032945.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8032946.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8032947.1 | REGULATOR OF RPOS |
| CAI8032948.1 | UDP-GLUCOSE 6-DEHYDROGENASE TUAD |
| CAI8032949.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032950.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8032951.1 | |
| CAI8032952.1 | |
| CAI8032953.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8032954.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032955.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032956.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8032958.1 | PROLINE AND SERINE-RICH PROTEIN 3 |
| CAI8032957.1 | PROLINE AND SERINE-RICH PROTEIN 3 |
| CAI8032959.1 | PREFOLDIN SUBUNIT 2 |
| CAI8032960.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8032962.1 | |
| CAI8032961.1 | |
| CAI8032963.1 | |
| CAI8032964.1 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
| CAI8032965.1 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
| CAI8032967.1 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
| CAI8032966.1 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
| CAI8032968.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8032969.1 | HISTONE ACETYLTRANSFERASE |
| CAI8032970.1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
