Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032670.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8032672.1 | |
| CAI8032674.1 | PROTEIN SIDEKICK |
| CAI8032673.1 | PROTEIN SIDEKICK |
| CAI8032675.1 | |
| CAI8032676.1 | UNCHARACTERIZED |
| CAI8032677.1 | |
| CAI8032678.1 | |
| CAI8032679.1 | |
| CAI8032680.1 | |
| CAI8032681.1 | HISTONE H2A |
| CAI8032682.1 | |
| CAI8032683.1 | |
| CAI8032684.1 | THIOSULFATE SULFERTANSFERASE |
| CAI8032685.1 | |
| CAI8032686.1 | |
| CAI8032687.1 | |
| CAI8032688.1 | |
| CAI8032689.1 | |
| CAI8032690.1 | PROTEIN SIDEKICK |
| CAI8032691.1 | PROTEIN SIDEKICK |
| CAI8032692.1 | PROTEIN SIDEKICK |
| CAI8032693.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8032694.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8032695.1 | INTELECTIN |
| CAI8032696.1 | |
| CAI8032697.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8032698.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8032699.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8032700.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8032701.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI8032703.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8032702.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8032704.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8032705.1 | GTPASE DER |
| CAI8032706.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8032707.1 | THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC |
| CAI8032708.1 | IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED |
| CAI8032709.1 | |
| CAI8032710.1 | |
| CAI8032711.1 | |
| CAI8032712.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8032713.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8032714.1 | LEUCINE DEHYDROGENASE |
| CAI8032715.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8032716.1 | ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT |
| CAI8032720.1 | PTHR43509 |
| CAI8032719.1 | PTHR43509 |
| CAI8032718.1 | PTHR43509 |
| CAI8032717.1 | PTHR43509 |
