Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032471.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8032472.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8032475.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032476.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032474.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032473.1 | ELONGATION FACTOR TU-RELATED |
| CAI8032478.1 | DNA REPAIR PROTEIN RADA |
| CAI8032477.1 | DNA REPAIR PROTEIN RADA |
| CAI8032479.1 | |
| CAI8032484.1 | DYNAMIN |
| CAI8032483.1 | DYNAMIN |
| CAI8032481.1 | DYNAMIN |
| CAI8032480.1 | DYNAMIN |
| CAI8032482.1 | |
| CAI8032485.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8032486.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8032487.1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| CAI8032488.1 | |
| CAI8032489.1 | 60S RIBOSOMAL PROTEIN L28 |
| CAI8032490.1 | GLOMULIN |
| CAI8032492.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8032493.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8032494.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8032491.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8032496.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032495.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032497.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032498.1 | |
| CAI8032499.1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| CAI8032500.1 | |
| CAI8032501.1 | CHONDROITIN SYNTHASE |
| CAI8032506.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8032505.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8032503.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8032504.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8032502.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8032509.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8032510.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8032508.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8032507.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8032511.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8032512.1 | |
| CAI8032514.1 | ANKYRIN REPEAT CONTAINING |
| CAI8032513.1 | SI:CH211-189E2.2 |
| CAI8032515.1 | |
| CAI8032516.1 | |
| CAI8032517.1 | |
| CAI8032518.1 | |
| CAI8032519.1 | UNCHARACTERIZED |
| CAI8032520.1 |
