Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032271.1 | |
| CAI8032273.1 | |
| CAI8032272.1 | |
| CAI8032274.1 | |
| CAI8032275.1 | |
| CAI8032276.1 | |
| CAI8032277.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8032278.1 | |
| CAI8032282.1 | EPH RECEPTOR A5 |
| CAI8032283.1 | EPH RECEPTOR A5 |
| CAI8032281.1 | EPH RECEPTOR A5 |
| CAI8032279.1 | TENASCIN |
| CAI8032280.1 | TENASCIN |
| CAI8032284.1 | |
| CAI8032285.1 | |
| CAI8032286.1 | |
| CAI8032287.1 | |
| CAI8032288.1 | |
| CAI8032289.1 | |
| CAI8032290.1 | |
| CAI8032291.1 | |
| CAI8032292.1 | |
| CAI8032293.1 | |
| CAI8032296.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8032295.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8032294.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8032297.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8032298.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8032300.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8032301.1 | SEC15 |
| CAI8032299.1 | SEC15 |
| CAI8032302.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8032303.1 | |
| CAI8032304.1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
| CAI8032309.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032308.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032307.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032306.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032305.1 | |
| CAI8032310.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032312.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032311.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032313.1 | PROTEIN KINASE C-BINDING PROTEIN 1 |
| CAI8032314.1 | |
| CAI8032315.1 | 40S RIBOSOMAL PROTEIN S8 |
| CAI8032320.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8032319.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8032318.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8032317.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8032316.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
