Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032171.1 | CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL |
| CAI8032172.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8032173.1 | |
| CAI8032174.1 | |
| CAI8032176.1 | |
| CAI8032175.1 | |
| CAI8032178.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8032177.1 | |
| CAI8032179.1 | |
| CAI8032181.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| CAI8032180.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| CAI8032182.1 | |
| CAI8032183.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| CAI8032184.1 | |
| CAI8032185.1 | |
| CAI8032186.1 | CHITIN SYNTHASE |
| CAI8032187.1 | CHITIN SYNTHASE |
| CAI8032189.1 | CHITIN SYNTHASE |
| CAI8032188.1 | CHITIN SYNTHASE |
| CAI8032190.1 | |
| CAI8032192.1 | CHITIN SYNTHASE |
| CAI8032193.1 | CHITIN SYNTHASE |
| CAI8032191.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8032194.1 | |
| CAI8032195.1 | |
| CAI8032196.1 | |
| CAI8032197.1 | ELONGATION FACTOR 1-GAMMA |
| CAI8032200.1 | ELONGATION FACTOR 1-GAMMA |
| CAI8032199.1 | ELONGATION FACTOR 1-GAMMA |
| CAI8032198.1 | ELONGATION FACTOR 1-GAMMA |
| CAI8032201.1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
| CAI8032203.1 | |
| CAI8032202.1 | |
| CAI8032204.1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| CAI8032205.1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| CAI8032206.1 | |
| CAI8032207.1 | |
| CAI8032208.1 | TRANSLATION INITIATION FACTOR-RELATED |
| CAI8032210.1 | BREAST CANCER METASTASIS-SUPPRESSOR 1 |
| CAI8032209.1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
| CAI8032211.1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
| CAI8032212.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8032213.1 | PROTEIN UNC-50 HOMOLOG |
| CAI8032218.1 | AGAP000124-PA |
| CAI8032219.1 | AGAP000124-PA |
| CAI8032220.1 | AGAP000124-PA |
| CAI8032217.1 | AGAP000124-PA |
| CAI8032216.1 | AGAP000124-PA |
| CAI8032214.1 | AGAP000124-PA |
| CAI8032215.1 | AGAP000124-PA |
