Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8032069.1 | |
| CAI8032072.1 | |
| CAI8032073.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8032074.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8032075.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11 |
| CAI8032076.1 | |
| CAI8032077.1 | |
| CAI8032078.1 | STEERIN |
| CAI8032080.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032079.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032081.1 | |
| CAI8032084.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032083.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032085.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032082.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032086.1 | LYSOSOMAL ACID LIPASE-RELATED |
| CAI8032089.1 | C5ORF31 |
| CAI8032088.1 | C5ORF31 |
| CAI8032087.1 | C5ORF31 |
| CAI8032090.1 | PHOSPHOLIPASE D |
| CAI8032091.1 | PHOSPHOLIPASE D |
| CAI8032093.1 | NUCLEOPORIN NUP37 P37 -RELATED |
| CAI8032094.1 | NUCLEOPORIN NUP37 P37 -RELATED |
| CAI8032092.1 | NUCLEOPORIN NUP37 P37 -RELATED |
| CAI8032096.1 | - |
| CAI8032095.1 | DOCKING PROTEIN RELATED |
| CAI8032097.1 | - |
| CAI8032098.1 | - |
| CAI8032103.1 | RNA-BINDING MOTIF PROTEIN 14B |
| CAI8032102.1 | RNA-BINDING MOTIF PROTEIN 14B |
| CAI8032101.1 | RNA-BINDING MOTIF PROTEIN 14B |
| CAI8032100.1 | RNA-BINDING MOTIF PROTEIN 14B |
| CAI8032099.1 | RNA-BINDING MOTIF PROTEIN 14B |
| CAI8032104.1 | - |
| CAI8032106.1 | - |
| CAI8032107.1 | - |
| CAI8032105.1 | - |
| CAI8032108.1 | - |
| CAI8032109.1 | DYNAMIN |
| CAI8032110.1 | |
| CAI8032111.1 | |
| CAI8032112.1 | - |
| CAI8032113.1 | |
| CAI8032114.1 | - |
| CAI8032115.1 | PARVIN |
| CAI8032117.1 | RABIN3-RELATED |
| CAI8032116.1 | RABIN3-RELATED |
| CAI8032118.1 | |
| CAI8032119.1 | VON HIPPEL-LINDAU PROTEIN |
| CAI8032120.1 |
