Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031971.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| CAI8031972.1 | |
| CAI8031973.1 | |
| CAI8031976.1 | FI19480P1 |
| CAI8031975.1 | FI19480P1 |
| CAI8031974.1 | FI19480P1 |
| CAI8031978.1 | FI19480P1 |
| CAI8031977.1 | FI19480P1 |
| CAI8031979.1 | FI19480P1 |
| CAI8031980.1 | MEIOTIC RECOMBINATION PROTEIN REC114 |
| CAI8031981.1 | ANDROGEN-INDUCED PROTEIN 1-RELATED |
| CAI8031983.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
| CAI8031982.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
| CAI8031984.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
| CAI8031985.1 | |
| CAI8031986.1 | KICSTOR COMPLEX PROTEIN C12ORF66 |
| CAI8031987.1 | LEUCINE CARBOXYL METHYLTRANSFERASE |
| CAI8031988.1 | LEUCINE CARBOXYL METHYLTRANSFERASE |
| CAI8031990.1 | LEUCINE CARBOXYL METHYLTRANSFERASE |
| CAI8031989.1 | LEUCINE CARBOXYL METHYLTRANSFERASE |
| CAI8031991.1 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
| CAI8031992.1 | |
| CAI8031993.1 | PHENAZINE BIOSYNTHESIS PROTEIN |
| CAI8031994.1 | |
| CAI8031995.1 | SEL-1-LIKE PROTEIN |
| CAI8031996.1 | SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE-RELATED |
| CAI8032000.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8031998.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8031999.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8031997.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8032003.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8032002.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8032001.1 | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 |
| CAI8032004.1 | OCTANOYLTRANSFERASE |
| CAI8032005.1 | SMR FAMILY PROTON-DEPENDENT DRUG EFFLUX TRANSPORTER SUGE |
| CAI8032006.1 | 5-OXOPROLINASE RELATED |
| CAI8032007.1 | 5-OXOPROLINASE RELATED |
| CAI8032008.1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| CAI8032009.1 | |
| CAI8032011.1 | MONOACYLGLYCEROL LIPASE |
| CAI8032010.1 | MONOACYLGLYCEROL LIPASE |
| CAI8032016.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032015.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032017.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032014.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032013.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032012.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8032018.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8032019.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8032020.1 | MALTOSE TRANSPORT SYSTEM PERMEASE-RELATED |
