Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031921.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8031922.1 | |
| CAI8031923.1 | |
| CAI8031924.1 | |
| CAI8031925.1 | |
| CAI8031926.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8031929.1 | MRNA TURNOVER PROTEIN 4 MRTO4 |
| CAI8031928.1 | MRNA TURNOVER PROTEIN 4 MRTO4 |
| CAI8031927.1 | MRNA TURNOVER PROTEIN 4 MRTO4 |
| CAI8031930.1 | |
| CAI8031931.1 | |
| CAI8031935.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8031933.1 | MOLTING PROTEIN MLT-4 |
| CAI8031936.1 | MOLTING PROTEIN MLT-4 |
| CAI8031937.1 | MOLTING PROTEIN MLT-4 |
| CAI8031934.1 | |
| CAI8031932.1 | |
| CAI8031939.1 | ANKYRIN REPEAT CONTAINING |
| CAI8031938.1 | ANKYRIN REPEAT CONTAINING |
| CAI8031940.1 | MOLTING PROTEIN MLT-4 |
| CAI8031941.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031943.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031942.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031944.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031945.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031946.1 | |
| CAI8031947.1 | |
| CAI8031948.1 | |
| CAI8031949.1 | UNCHARACTERIZED DUF1308 |
| CAI8031950.1 | EPH RECEPTOR A5 |
| CAI8031951.1 | |
| CAI8031952.1 | |
| CAI8031953.1 | |
| CAI8031954.1 | |
| CAI8031956.1 | TITIN |
| CAI8031955.1 | |
| CAI8031957.1 | ALCOHOL DEHYDROGENASE |
| CAI8031958.1 | N-ACETYLTRANSFERASE EIS |
| CAI8031959.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8031960.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8031961.1 | |
| CAI8031962.1 | NUCLEOTIDE KINASE |
| CAI8031963.1 | WD REPEAT DOMAIN-RELATED |
| CAI8031965.1 | PEFLIN |
| CAI8031966.1 | PEFLIN |
| CAI8031967.1 | PEFLIN |
| CAI8031964.1 | PEFLIN |
| CAI8031968.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| CAI8031970.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| CAI8031969.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
