Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031623.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8031622.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8031624.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8031625.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8031626.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8031627.1 | |
| CAI8031628.1 | |
| CAI8031621.1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4 |
| CAI8031631.1 | DNA POLYMERASE I |
| CAI8031632.1 | DNA POLYMERASE I |
| CAI8031630.1 | |
| CAI8031629.1 | |
| CAI8031633.1 | |
| CAI8031634.1 | |
| CAI8031635.1 | DNA POLYMERASE I |
| CAI8031636.1 | DNA POLYMERASE I |
| CAI8031637.1 | DNA POLYMERASE I |
| CAI8031638.1 | DNA POLYMERASE I |
| CAI8031640.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8031639.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8031641.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8031642.1 | TALIN |
| CAI8031643.1 | COMPLEX III ASSEMBLY FACTOR LYRM7 |
| CAI8031644.1 | GLYCOSYLTRANSFERASE |
| CAI8031645.1 | |
| CAI8031646.1 | |
| CAI8031647.1 | |
| CAI8031651.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031653.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031652.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031654.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031650.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031649.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031648.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031655.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8031656.1 | TRANSMEMBRANE PROTEIN 243 |
| CAI8031657.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8031658.1 | NUCLEOSIDE DIPHOSPHATE KINASE 7 |
| CAI8031659.1 | |
| CAI8031662.1 | UROCANATE HYDRATASE |
| CAI8031661.1 | UROCANATE HYDRATASE |
| CAI8031664.1 | UROCANATE HYDRATASE |
| CAI8031665.1 | UROCANATE HYDRATASE |
| CAI8031666.1 | UROCANATE HYDRATASE |
| CAI8031663.1 | UROCANATE HYDRATASE |
| CAI8031660.1 | UROCANATE HYDRATASE |
| CAI8031667.1 | UROCANATE HYDRATASE |
| CAI8031668.1 | HISTIDINE AMMONIA-LYASE |
| CAI8031669.1 | UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 |
| CAI8031670.1 | NETRIN/LAMININ-RELATED |
