Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031471.1 | |
| CAI8031472.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8031474.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8031473.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8031475.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031476.1 | |
| CAI8031479.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8031477.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8031480.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8031478.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8031482.1 | SI:CH211-196P9.1-RELATED |
| CAI8031481.1 | SI:CH211-196P9.1-RELATED |
| CAI8031483.1 | |
| CAI8031484.1 | |
| CAI8031486.1 | |
| CAI8031485.1 | |
| CAI8031487.1 | GTP-BINDING |
| CAI8031490.1 | INTEGRIN BETA SUBUNIT |
| CAI8031489.1 | INTEGRIN BETA SUBUNIT |
| CAI8031488.1 | INTEGRIN BETA SUBUNIT |
| CAI8031492.1 | INTEGRIN BETA SUBUNIT |
| CAI8031491.1 | INTEGRIN BETA SUBUNIT |
| CAI8031494.1 | INTEGRIN BETA SUBUNIT |
| CAI8031493.1 | INTEGRIN BETA SUBUNIT |
| CAI8031495.1 | INTEGRIN BETA SUBUNIT |
| CAI8031496.1 | INTEGRIN BETA SUBUNIT |
| CAI8031497.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031498.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8031499.1 | |
| CAI8031505.1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| CAI8031503.1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| CAI8031504.1 | |
| CAI8031502.1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| CAI8031501.1 | |
| CAI8031500.1 | |
| CAI8031506.1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| CAI8031508.1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| CAI8031507.1 | |
| CAI8031509.1 | |
| CAI8031510.1 | |
| CAI8031511.1 | |
| CAI8031512.1 | |
| CAI8031513.1 | |
| CAI8031514.1 | |
| CAI8031515.1 | |
| CAI8031516.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8031517.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8031518.1 | |
| CAI8031519.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8031520.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
