Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031221.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8031222.1 | |
| CAI8031223.1 | ACONITATE HYDRATASE B |
| CAI8031224.1 | ACONITATE HYDRATASE B |
| CAI8031225.1 | ACONITATE HYDRATASE B |
| CAI8031226.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8031227.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8031228.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8031229.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8031230.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8031231.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8031232.1 | XANTHINE DEHYDROGENASE |
| CAI8031233.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031235.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031234.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031236.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031238.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8031237.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8031240.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8031239.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8031241.1 | UPF0182 PROTEIN SLL1060 |
| CAI8031242.1 | AMINOTRANSFERASE CLASS III |
| CAI8031243.1 | ARGININOSUCCINATE LYASE |
| CAI8031244.1 | ARGININOSUCCINATE LYASE |
| CAI8031245.1 | ARGININOSUCCINATE LYASE |
| CAI8031251.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031250.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031249.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031248.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031247.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031246.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8031252.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8031253.1 | ZGC:162816-RELATED |
| CAI8031254.1 | ZGC:162816-RELATED |
| CAI8031255.1 | METHYLTRANSFERASE LIKE 7B |
| CAI8031256.1 | GDP-MANNOSE MANNOSYL HYDROLASE |
| CAI8031257.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8031259.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8031258.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8031260.1 | |
| CAI8031261.1 | |
| CAI8031262.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8031263.1 | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC |
| CAI8031267.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8031266.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8031265.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8031264.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8031268.1 | ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED |
| CAI8031269.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8031270.1 | PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING |
