Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031121.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8031122.1 | |
| CAI8031126.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8031124.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8031123.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8031125.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8031127.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8031128.1 | |
| CAI8031129.1 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| CAI8031130.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8031131.1 | SLR0882 PROTEIN-RELATED |
| CAI8031132.1 | |
| CAI8031133.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8031134.1 | FERREDOXIN-RELATED |
| CAI8031135.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8031136.1 | GLUTATHIONE HYDROLASE |
| CAI8031137.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8031138.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8031139.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8031140.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8031141.1 | |
| CAI8031142.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8031143.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8031144.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8031145.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8031146.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8031147.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8031148.1 | OXALATE-BINDING PROTEIN |
| CAI8031149.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8031150.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8031151.1 | 6-PHOSPHOGLUCONOLACTONASE-RELATED |
| CAI8031152.1 | |
| CAI8031153.1 | TRANSAMIDASE |
| CAI8031154.1 | - |
| CAI8031155.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8031156.1 | |
| CAI8031157.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN |
| CAI8031158.1 | ACYL-COA DEHYDROGENASE |
| CAI8031159.1 | |
| CAI8031160.1 | ACYL-COA DEHYDROGENASE |
| CAI8031161.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8031162.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8031163.1 | ARGININOSUCCINATE SYNTHASE |
| CAI8031164.1 | ANTITOXIN HICB |
| CAI8031165.1 | AMINOTRANSFERASE CLASS III |
| CAI8031166.1 | LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 |
| CAI8031168.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031167.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8031169.1 | |
| CAI8031170.1 | AMINOTRANSFERASE CLASS V |
