Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8031021.1 | SHIKIMATE DEHYDROGENASE |
| CAI8031022.1 | DNA POLYMERASE III SUBUNIT EPSILON |
| CAI8031023.1 | ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH] |
| CAI8031024.1 | SLR1189 PROTEIN |
| CAI8031025.1 | SLR1189 PROTEIN |
| CAI8031026.1 | SLR1189 PROTEIN |
| CAI8031027.1 | |
| CAI8031028.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8031029.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8031030.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8031031.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8031032.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8031035.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8031034.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8031036.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8031033.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8031037.1 | |
| CAI8031042.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031043.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031041.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031040.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031039.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031038.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031044.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8031045.1 | |
| CAI8031046.1 | |
| CAI8031047.1 | |
| CAI8031048.1 | |
| CAI8031049.1 | |
| CAI8031050.1 | |
| CAI8031051.1 | |
| CAI8031052.1 | |
| CAI8031053.1 | |
| CAI8031055.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031054.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031058.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031057.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031056.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031059.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031060.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8031061.1 | |
| CAI8031062.1 | |
| CAI8031064.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031065.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031066.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031063.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031067.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031068.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE |
| CAI8031069.1 | |
| CAI8031075.1 |
