Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030821.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8030823.1 | |
| CAI8030822.1 | |
| CAI8030824.1 | |
| CAI8030827.1 | |
| CAI8030826.1 | |
| CAI8030825.1 | |
| CAI8030828.1 | NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER |
| CAI8030830.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8030829.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8030831.1 | CYTOCHROME B5 |
| CAI8030832.1 | |
| CAI8030833.1 | |
| CAI8030834.1 | BEIGE/BEACH-RELATED |
| CAI8030835.1 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
| CAI8030836.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8030837.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI8030838.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8030839.1 | |
| CAI8030840.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8030841.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8030842.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8030843.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8030844.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8030845.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8030846.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8030847.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8030848.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI8030849.1 | |
| CAI8030850.1 | THIAZOLE SYNTHASE |
| CAI8030851.1 | THIAZOLE SYNTHASE |
| CAI8030852.1 | THIAZOLE SYNTHASE |
| CAI8030853.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8030854.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8030855.1 | N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED |
| CAI8030856.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8030857.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8030858.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8030859.1 | PEROXISOMAL SARCOSINE OXIDASE |
| CAI8030860.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8030861.1 | THYMOCYTE NUCLEAR PROTEIN 1 |
| CAI8030862.1 | SUGAR KINASE |
| CAI8030863.1 | SUGAR KINASE |
| CAI8030864.1 | |
| CAI8030865.1 | BIFUNCTIONAL TH2 PROTEIN |
| CAI8030866.1 | - |
| CAI8030867.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8030868.1 | METALLO-BETA-LACTAMASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G12770) |
| CAI8030869.1 | VALYL-TRNA SYNTHETASES |
| CAI8030870.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
