Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030671.1 | |
| CAI8030672.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8030673.1 | NITRITE REDUCTASE (NADH) LARGE SUBUNIT |
| CAI8030674.1 | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 |
| CAI8030675.1 | MOXR FAMILY PROTEIN |
| CAI8030676.1 | EPOXIDE HYDROLASE |
| CAI8030677.1 | - |
| CAI8030679.1 | CBB3-TYPE CYTOCHROME C OXIDASE SUBUNIT FIXP |
| CAI8030678.1 | |
| CAI8030680.1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
| CAI8030681.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8030685.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8030684.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8030683.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8030682.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8030687.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8030686.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8030688.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8030689.1 | SLL1193 PROTEIN |
| CAI8030690.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8030691.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8030692.1 | BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH |
| CAI8030693.1 | BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH |
| CAI8030694.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8030695.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8030696.1 | |
| CAI8030697.1 | LEU/ILE/VAL-BINDING ABC TRANSPORTER SUBUNIT |
| CAI8030698.1 | LEU/ILE/VAL-BINDING ABC TRANSPORTER SUBUNIT |
| CAI8030699.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI8030700.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI8030701.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8030703.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8030702.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8030705.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8030704.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8030706.1 | MULTIFUNCTIONAL CCA PROTEIN |
| CAI8030707.1 | HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED |
| CAI8030708.1 | |
| CAI8030709.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8030710.1 | METHIONINE SYNTHASE |
| CAI8030711.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8030712.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8030713.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8030714.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8030715.1 | AMIDOHYDROLASE |
| CAI8030716.1 | - |
| CAI8030717.1 | TYPE III PANTOTHENATE KINASE |
| CAI8030718.1 | THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC |
| CAI8030719.1 | |
| CAI8030720.1 | EPOXYQUEUOSINE REDUCTASE |
