Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030371.1 | UNCHARACTERIZED DUF1167 |
| CAI8030370.1 | UNCHARACTERIZED DUF1167 |
| CAI8030369.1 | UNCHARACTERIZED DUF1167 |
| CAI8030374.1 | |
| CAI8030375.1 | |
| CAI8030377.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
| CAI8030376.1 | |
| CAI8030378.1 | SUA5 |
| CAI8030379.1 | DNA MISMATCH REPAIR PROTEINS MUTS FAMILY DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8030380.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8030381.1 | |
| CAI8030382.1 | |
| CAI8030383.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8030384.1 | SLR6095 PROTEIN |
| CAI8030385.1 | BLL1576 PROTEIN |
| CAI8030386.1 | SLR1406 PROTEIN |
| CAI8030387.1 | DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT |
| CAI8030388.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8030389.1 | |
| CAI8030390.1 | |
| CAI8030391.1 | |
| CAI8030392.1 | THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED |
| CAI8030393.1 | UNCHARACTERIZED |
| CAI8030394.1 | |
| CAI8030395.1 | |
| CAI8030396.1 | - |
| CAI8030397.1 | |
| CAI8030398.1 | SLR1406 PROTEIN |
| CAI8030399.1 | |
| CAI8030400.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| CAI8030401.1 | MONOACYLGLYCEROL LIPASE |
| CAI8030402.1 | |
| CAI8030403.1 | |
| CAI8030404.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8030405.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8030406.1 | INTEGRIN BETA SUBUNIT |
| CAI8030407.1 | INTEGRIN BETA SUBUNIT |
| CAI8030408.1 | INTEGRIN BETA SUBUNIT |
| CAI8030409.1 | INTEGRIN BETA SUBUNIT |
| CAI8030411.1 | |
| CAI8030410.1 | |
| CAI8030412.1 | |
| CAI8030413.1 | THIOREDOXIN PEROXIDASE |
| CAI8030416.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8030415.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8030414.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8030419.1 | DEP DOMAIN PROTEIN |
| CAI8030417.1 | |
| CAI8030418.1 | |
| CAI8030420.1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
