Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030171.1 | |
| CAI8030175.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030174.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030173.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030172.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030177.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030176.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030178.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030181.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030180.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030179.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030182.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030183.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030184.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8030185.1 | |
| CAI8030186.1 | |
| CAI8030187.1 | |
| CAI8030188.1 | LIPOPROTEIN-RELATED |
| CAI8030189.1 | |
| CAI8030190.1 | |
| CAI8030191.1 | |
| CAI8030192.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8030193.1 | - |
| CAI8030194.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8030195.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8030196.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8030197.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8030199.1 | |
| CAI8030198.1 | |
| CAI8030200.1 | |
| CAI8030201.1 | |
| CAI8030202.1 | |
| CAI8030203.1 | |
| CAI8030204.1 | |
| CAI8030205.1 | |
| CAI8030206.1 | |
| CAI8030207.1 | RHO FAMILY GTPASE |
| CAI8030208.1 | |
| CAI8030210.1 | PROLINE IMINOPEPTIDASE |
| CAI8030209.1 | PROLINE IMINOPEPTIDASE |
| CAI8030211.1 | |
| CAI8030212.1 | |
| CAI8030213.1 | |
| CAI8030214.1 | |
| CAI8030217.1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
| CAI8030216.1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
| CAI8030215.1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
| CAI8030218.1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
| CAI8030219.1 | |
| CAI8030220.1 |
