Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030121.1 | FUCULOSE PHOSPHATE ALDOLASE |
| CAI8030122.1 | BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE |
| CAI8030123.1 | BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE |
| CAI8030124.1 | UNCHARACTERIZED PROTEIN YJBQ-RELATED |
| CAI8030125.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8030126.1 | PROTEIN YEEZ |
| CAI8030127.1 | 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE |
| CAI8030128.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8030129.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8030130.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI8030131.1 | |
| CAI8030132.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8030133.1 | EPOXIDE HYDROLASE |
| CAI8030134.1 | BLR3430 PROTEIN |
| CAI8030135.1 | RECBCD ENZYME SUBUNIT RECC |
| CAI8030136.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8030137.1 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
| CAI8030138.1 | |
| CAI8030139.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8030140.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8030141.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8030142.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8030143.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030147.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030148.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030146.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030145.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030144.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8030150.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8030149.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8030151.1 | OPPC IN A BINDING PROTEIN-DEPENDENT TRANSPORT SYSTEM |
| CAI8030152.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8030153.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8030154.1 | OXALATE-BINDING PROTEIN |
| CAI8030155.1 | UREASE |
| CAI8030158.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8030157.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8030156.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8030161.1 | |
| CAI8030160.1 | |
| CAI8030159.1 | |
| CAI8030163.1 | |
| CAI8030162.1 | |
| CAI8030164.1 | |
| CAI8030166.1 | |
| CAI8030167.1 | |
| CAI8030165.1 | |
| CAI8030168.1 | |
| CAI8030169.1 | |
| CAI8030170.1 |
