Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030221.1 | RIKEN CDNA 4921504E06 GENE |
| CAI8030222.1 | CALSYNTENIN |
| CAI8030223.1 | |
| CAI8030225.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8030224.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8030226.1 | LSM12 HOMOLOG |
| CAI8030228.1 | RAC GTPASE-ACTIVATING PROTEIN 1 |
| CAI8030227.1 | |
| CAI8030229.1 | NNMT/PNMT/TEMT FAMILY MEMBER |
| CAI8030230.1 | - |
| CAI8030231.1 | |
| CAI8030232.1 | |
| CAI8030233.1 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
| CAI8030234.1 | SI:CH73-250A16.5-RELATED |
| CAI8030239.1 | CULLIN |
| CAI8030238.1 | CULLIN |
| CAI8030237.1 | CULLIN |
| CAI8030236.1 | |
| CAI8030235.1 | CULLIN |
| CAI8030240.1 | CULLIN |
| CAI8030241.1 | CULLIN |
| CAI8030242.1 | CULLIN |
| CAI8030243.1 | CULLIN |
| CAI8030244.1 | CULLIN |
| CAI8030245.1 | |
| CAI8030246.1 | |
| CAI8030247.1 | SPARTIN |
| CAI8030248.1 | |
| CAI8030249.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8030250.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8030251.1 | |
| CAI8030253.1 | - |
| CAI8030254.1 | - |
| CAI8030255.1 | - |
| CAI8030256.1 | - |
| CAI8030252.1 | |
| CAI8030258.1 | |
| CAI8030257.1 | |
| CAI8030259.1 | |
| CAI8030260.1 | |
| CAI8030265.1 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 |
| CAI8030264.1 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 |
| CAI8030263.1 | F-BOX ONLY PROTEIN 48-RELATED |
| CAI8030262.1 | F-BOX ONLY PROTEIN 48-RELATED |
| CAI8030261.1 | F-BOX ONLY PROTEIN 15 |
| CAI8030266.1 | F-BOX ONLY PROTEIN 15 |
| CAI8030267.1 | |
| CAI8030268.1 | |
| CAI8030269.1 | METHIONINE SYNTHASE |
| CAI8030270.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
