Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030271.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8030272.1 | |
| CAI8030274.1 | UNCHARACTERIZED |
| CAI8030275.1 | UNCHARACTERIZED |
| CAI8030273.1 | UNCHARACTERIZED |
| CAI8030276.1 | UNCHARACTERIZED |
| CAI8030277.1 | |
| CAI8030278.1 | |
| CAI8030279.1 | |
| CAI8030282.1 | |
| CAI8030281.1 | |
| CAI8030280.1 | |
| CAI8030283.1 | RH59310P |
| CAI8030284.1 | |
| CAI8030290.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030288.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030286.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030289.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030285.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030287.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030291.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 |
| CAI8030293.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8030292.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8030294.1 | ANKYRIN REPEAT DOMAIN 40 |
| CAI8030295.1 | ANKYRIN REPEAT DOMAIN 40 |
| CAI8030296.1 | |
| CAI8030297.1 | |
| CAI8030298.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI8030300.1 | WASH COMPLEX SUBUNIT 5 |
| CAI8030299.1 | WASH COMPLEX SUBUNIT 5 |
| CAI8030301.1 | OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1 |
| CAI8030302.1 | SYNTENIN RELATED |
| CAI8030303.1 | NUCLEOPROTEIN TPR-RELATED |
| CAI8030304.1 | |
| CAI8030305.1 | |
| CAI8030306.1 | |
| CAI8030307.1 | |
| CAI8030308.1 | |
| CAI8030309.1 | |
| CAI8030310.1 | |
| CAI8030311.1 | |
| CAI8030312.1 | EPH RECEPTOR A5 |
| CAI8030314.1 | |
| CAI8030313.1 | |
| CAI8030315.1 | |
| CAI8030317.1 | CYTOKINE RECEPTOR |
| CAI8030318.1 | CYTOKINE RECEPTOR |
| CAI8030316.1 | CYTOKINE RECEPTOR |
| CAI8030319.1 | CYTOKINE RECEPTOR |
| CAI8030320.1 | TENASCIN |
