Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8030021.1 | SENTRIN/SUMO-SPECIFIC PROTEASE |
| CAI8030023.1 | |
| CAI8030022.1 | |
| CAI8030029.1 | ARGININE OR CREATINE KINASE |
| CAI8030030.1 | SHIPPO-1-RELATED |
| CAI8030028.1 | SHIPPO-1-RELATED |
| CAI8030026.1 | SHIPPO-1-RELATED |
| CAI8030027.1 | SHIPPO-1-RELATED |
| CAI8030025.1 | |
| CAI8030024.1 | |
| CAI8030031.1 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
| CAI8030032.1 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
| CAI8030034.1 | N-TERMINAL ACETYLTRANSFERASE |
| CAI8030033.1 | N-TERMINAL ACETYLTRANSFERASE |
| CAI8030035.1 | N-TERMINAL ACETYLTRANSFERASE |
| CAI8030037.1 | PEROXISOMAL BIOGENESIS FACTOR 3 |
| CAI8030036.1 | PEROXISOMAL BIOGENESIS FACTOR 3 |
| CAI8030038.1 | PEROXISOMAL BIOGENESIS FACTOR 3 |
| CAI8030039.1 | |
| CAI8030041.1 | |
| CAI8030043.1 | |
| CAI8030040.1 | |
| CAI8030042.1 | UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER |
| CAI8030044.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
| CAI8030046.1 | GLUTAREDOXIN 2 |
| CAI8030045.1 | GLUTAREDOXIN 2 |
| CAI8030052.1 | FORKHEAD BOX P, ISOFORM C |
| CAI8030051.1 | FORKHEAD BOX P, ISOFORM C |
| CAI8030050.1 | FORKHEAD BOX P, ISOFORM C |
| CAI8030049.1 | FORKHEAD BOX P, ISOFORM C |
| CAI8030048.1 | FORKHEAD BOX P, ISOFORM C |
| CAI8030047.1 | |
| CAI8030053.1 | |
| CAI8030054.1 | |
| CAI8030055.1 | SERINE PROTEASE INHIBITOR |
| CAI8030056.1 | |
| CAI8030058.1 | |
| CAI8030057.1 | |
| CAI8030059.1 | |
| CAI8030060.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8030061.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8030063.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI8030062.1 | |
| CAI8030064.1 | BASIGIN RELATED |
| CAI8030065.1 | BASIGIN RELATED |
| CAI8030066.1 | |
| CAI8030067.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8030068.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI8030069.1 | D-LACTATE DEHYDROGENASE |
| CAI8030072.1 | CYSTEINYL-TRNA SYNTHETASE |
