Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029771.1 | |
| CAI8029772.1 | |
| CAI8029773.1 | |
| CAI8029774.1 | |
| CAI8029775.1 | |
| CAI8029777.1 | |
| CAI8029776.1 | |
| CAI8029778.1 | |
| CAI8029779.1 | CONSERVED EXPRESSED OXIDOREDUCTASE (EUROFUNG) |
| CAI8029780.1 | |
| CAI8029781.1 | |
| CAI8029782.1 | |
| CAI8029783.1 | BCDNA.GH03377 |
| CAI8029784.1 | MANNONATE DEHYDRATASE |
| CAI8029785.1 | IDURONATE 2-SULFATASE |
| CAI8029786.1 | TRANSAMINASE |
| CAI8029787.1 | |
| CAI8029788.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8029789.1 | |
| CAI8029790.1 | ABC-TRANSPORTER METAL-BINDING PROTEIN |
| CAI8029791.1 | METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED |
| CAI8029793.1 | HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED |
| CAI8029792.1 | HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED |
| CAI8029794.1 | FE(2+)/MN(2+) TRANSPORTER PCL1 |
| CAI8029795.1 | - |
| CAI8029796.1 | |
| CAI8029797.1 | |
| CAI8029799.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8029798.1 | |
| CAI8029800.1 | |
| CAI8029801.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029802.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8029803.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| CAI8029804.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| CAI8029805.1 | |
| CAI8029806.1 | |
| CAI8029807.1 | CYTOKINE RECEPTOR |
| CAI8029808.1 | |
| CAI8029809.1 | CYTOKINE RECEPTOR |
| CAI8029810.1 | |
| CAI8029811.1 | |
| CAI8029812.1 | |
| CAI8029814.1 | |
| CAI8029813.1 | |
| CAI8029815.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8029816.1 | |
| CAI8029817.1 | |
| CAI8029819.1 | |
| CAI8029818.1 | |
| CAI8029820.1 | LD44762P |
