Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029619.1 | LYSYL-TRNA SYNTHETASE |
| CAI8029618.1 | LYSYL-TRNA SYNTHETASE |
| CAI8029623.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8029624.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8029625.1 | BLR3430 PROTEIN |
| CAI8029626.1 | |
| CAI8029627.1 | |
| CAI8029628.1 | |
| CAI8029629.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8029630.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8029631.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8029632.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8029633.1 | |
| CAI8029636.1 | CONTACTIN 5 |
| CAI8029637.1 | CONTACTIN 5 |
| CAI8029634.1 | |
| CAI8029635.1 | |
| CAI8029638.1 | BONUS, ISOFORM C-RELATED |
| CAI8029639.1 | BONUS, ISOFORM C-RELATED |
| CAI8029640.1 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
| CAI8029641.1 | |
| CAI8029642.1 | |
| CAI8029643.1 | |
| CAI8029644.1 | |
| CAI8029645.1 | |
| CAI8029646.1 | |
| CAI8029647.1 | |
| CAI8029648.1 | |
| CAI8029649.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8029650.1 | |
| CAI8029651.1 | |
| CAI8029652.1 | |
| CAI8029653.1 | |
| CAI8029654.1 | |
| CAI8029656.1 | |
| CAI8029655.1 | |
| CAI8029658.1 | |
| CAI8029657.1 | |
| CAI8029659.1 | |
| CAI8029660.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8029661.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8029663.1 | |
| CAI8029662.1 | |
| CAI8029664.1 | |
| CAI8029666.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029665.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029668.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029667.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029669.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029670.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
