About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8010271.1RAN BINDING PROTEIN 9-RELATED
CAI8010273.1CCR4-NOT TRANSCRIPTION COMPLEX
CAI8010272.1-
CAI8010274.1THIOSULFATE SULFERTANSFERASE
CAI8010275.1GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4
CAI8010277.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
CAI8010278.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
CAI8010276.1PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN
CAI8010279.1-
CAI8010281.1LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1
CAI8010280.1LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1
CAI8010282.1LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1
CAI8010285.1TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
CAI8010283.1TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
CAI8010284.1TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
CAI8010286.1TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
CAI8010288.1SKELETOR-RELATED
CAI8010287.1SKELETOR-RELATED
CAI8010289.1UBIQUITIN-CONJUGATING ENZYME E2
CAI8010290.1SKELETOR-RELATED
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