Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029671.1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| CAI8029672.1 | |
| CAI8029674.1 | REST COREPRESSOR COREST PROTEIN-RELATED |
| CAI8029673.1 | |
| CAI8029675.1 | REST COREPRESSOR COREST PROTEIN-RELATED |
| CAI8029676.1 | REST COREPRESSOR COREST PROTEIN-RELATED |
| CAI8029677.1 | REST COREPRESSOR COREST PROTEIN-RELATED |
| CAI8029679.1 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE |
| CAI8029678.1 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE |
| CAI8029680.1 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE |
| CAI8029682.1 | TRANSMEMBRANE PROTEIN 107 |
| CAI8029681.1 | TRANSMEMBRANE PROTEIN 107 |
| CAI8029683.1 | |
| CAI8029684.1 | |
| CAI8029688.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8029687.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI8029686.1 | |
| CAI8029685.1 | |
| CAI8029689.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8029690.1 | 5'->3' EXORIBONUCLEASE |
| CAI8029691.1 | |
| CAI8029692.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| CAI8029693.1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
| CAI8029694.1 | DELTA(14)-STEROL REDUCTASE |
| CAI8029695.1 | |
| CAI8029701.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029699.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029698.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029697.1 | |
| CAI8029696.1 | |
| CAI8029702.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029700.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029703.1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| CAI8029704.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8029705.1 | EXPRESSED PROTEIN |
| CAI8029706.1 | |
| CAI8029707.1 | |
| CAI8029708.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8029709.1 | OS01G0253100 PROTEIN |
| CAI8029710.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8029711.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8029712.1 | |
| CAI8029713.1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8029715.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8029716.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8029714.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8029717.1 | |
| CAI8029718.1 | |
| CAI8029720.1 | |
| CAI8029719.1 |
