Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029721.1 | |
| CAI8029722.1 | |
| CAI8029723.1 | |
| CAI8029724.1 | |
| CAI8029725.1 | |
| CAI8029726.1 | |
| CAI8029727.1 | |
| CAI8029728.1 | |
| CAI8029729.1 | |
| CAI8029731.1 | |
| CAI8029730.1 | |
| CAI8029732.1 | |
| CAI8029733.1 | |
| CAI8029734.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8029735.1 | OS01G0948300 PROTEIN |
| CAI8029736.1 | OS01G0948300 PROTEIN |
| CAI8029737.1 | OS01G0948300 PROTEIN |
| CAI8029738.1 | OS01G0948300 PROTEIN |
| CAI8029739.1 | OS01G0948300 PROTEIN |
| CAI8029740.1 | |
| CAI8029741.1 | |
| CAI8029742.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029744.1 | |
| CAI8029743.1 | |
| CAI8029745.1 | CATALASE |
| CAI8029746.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI8029747.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI8029748.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI8029749.1 | UPF0613 PROTEIN PB24D3.06C |
| CAI8029752.1 | |
| CAI8029754.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029753.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029755.1 | |
| CAI8029750.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029751.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029756.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8029757.1 | |
| CAI8029760.1 | CDC37-RELATED |
| CAI8029759.1 | CDC37-RELATED |
| CAI8029758.1 | CDC37-RELATED |
| CAI8029761.1 | CDC37-RELATED |
| CAI8029762.1 | SACSIN |
| CAI8029763.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8029764.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8029765.1 | |
| CAI8029766.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8029767.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8029768.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8029769.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8029770.1 |
