Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029470.1 | GATOR COMPLEX PROTEIN WDR59 |
| CAI8029472.1 | GATOR COMPLEX PROTEIN WDR59 |
| CAI8029473.1 | |
| CAI8029474.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8029475.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8029476.1 | DIHYDROPTERIDINE REDUCTASE |
| CAI8029477.1 | DIHYDROPTERIDINE REDUCTASE |
| CAI8029479.1 | D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8029478.1 | D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8029481.1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
| CAI8029480.1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
| CAI8029482.1 | |
| CAI8029484.1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| CAI8029485.1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| CAI8029483.1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| CAI8029486.1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| CAI8029487.1 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
| CAI8029490.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8029489.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8029488.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8029494.1 | BRCA2 AND CDKN1A INTERACTING PROTEIN |
| CAI8029492.1 | BRCA2 AND CDKN1A INTERACTING PROTEIN |
| CAI8029493.1 | BRCA2 AND CDKN1A INTERACTING PROTEIN |
| CAI8029491.1 | |
| CAI8029495.1 | BRCA2 AND CDKN1A INTERACTING PROTEIN |
| CAI8029496.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8029497.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI8029499.1 | |
| CAI8029500.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8029498.1 | |
| CAI8029501.1 | |
| CAI8029503.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8029502.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8029504.1 | |
| CAI8029505.1 | |
| CAI8029506.1 | |
| CAI8029507.1 | |
| CAI8029509.1 | |
| CAI8029508.1 | |
| CAI8029510.1 | |
| CAI8029511.1 | FAST LEU-RICH DOMAIN-CONTAINING |
| CAI8029513.1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT |
| CAI8029512.1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT |
| CAI8029514.1 | |
| CAI8029515.1 | |
| CAI8029519.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI8029518.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI8029517.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI8029516.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI8029523.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
