Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8029171.1 | ZINC TRANSPORTER 6 |
| CAI8029172.1 | |
| CAI8029173.1 | PEPTIDYLPROLYL ISOMERASE |
| CAI8029174.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA |
| CAI8029176.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA |
| CAI8029177.1 | AN1-TYPE ZINC FINGER PROTEIN |
| CAI8029175.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA |
| CAI8029178.1 | |
| CAI8029179.1 | |
| CAI8029180.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8029181.1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
| CAI8029182.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 |
| CAI8029187.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8029184.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8029186.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8029188.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8029185.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8029183.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8029189.1 | SULFATASE MODIFYING FACTOR 1, 2 |
| CAI8029190.1 | |
| CAI8029191.1 | |
| CAI8029192.1 | |
| CAI8029194.1 | |
| CAI8029193.1 | |
| CAI8029195.1 | |
| CAI8029197.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8029196.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8029198.1 | |
| CAI8029201.1 | GTP CYCLOHYDROLASE I |
| CAI8029200.1 | GTP CYCLOHYDROLASE I |
| CAI8029199.1 | GTP CYCLOHYDROLASE I |
| CAI8029202.1 | |
| CAI8029203.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8029206.1 | HOMOSERINE DEHYDROGENASE |
| CAI8029205.1 | HOMOSERINE DEHYDROGENASE |
| CAI8029204.1 | HOMOSERINE DEHYDROGENASE |
| CAI8029207.1 | |
| CAI8029209.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8029208.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8029210.1 | |
| CAI8029211.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8029212.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8029214.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8029213.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8029215.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8029216.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8029217.1 | |
| CAI8029218.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8029219.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8029220.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
