Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8028921.1 | PROHIBITIN |
| CAI8028922.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER |
| CAI8028923.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8028924.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8028925.1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
| CAI8028926.1 | 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE |
| CAI8028927.1 | |
| CAI8028929.1 | GMP SYNTHASE-RELATED |
| CAI8028928.1 | GMP SYNTHASE-RELATED |
| CAI8028930.1 | GMP SYNTHASE-RELATED |
| CAI8028932.1 | GMP SYNTHASE-RELATED |
| CAI8028931.1 | GMP SYNTHASE-RELATED |
| CAI8028933.1 | TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS |
| CAI8028934.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8028941.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028940.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028938.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028939.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028937.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028936.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028935.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8028942.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8028943.1 | WD40 REPEAT PROTEIN |
| CAI8028944.1 | UPF0182 PROTEIN SLL1060 |
| CAI8028945.1 | PROTEIN TOLB HOMOLOG |
| CAI8028946.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8028947.1 | MICROSOMAL DIPEPTIDASE |
| CAI8028948.1 | INNER MEMBRANE PEPTIDE TRANSPORTER |
| CAI8028949.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8028950.1 | ENDORIBONUCLEASE-RELATED |
| CAI8028951.1 | PHOSPHOMANNOMUTASE |
| CAI8028952.1 | PHOSPHOMANNOMUTASE |
| CAI8028953.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8028954.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8028955.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8028956.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8028957.1 | NUCLEOTIDE PYROPHOSPHOHYDROLASE |
| CAI8028958.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8028959.1 | |
| CAI8028960.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8028961.1 | |
| CAI8028962.1 | |
| CAI8028963.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8028964.1 | |
| CAI8028965.1 | |
| CAI8028966.1 | |
| CAI8028967.1 | |
| CAI8028968.1 | |
| CAI8028969.1 | |
| CAI8028970.1 |
